Sikkim-Manipal University of Health Medical and Technological Sciences (SMUHMTS) 2009 M.Sc Bio Informatics BI0036-PROGRAMMING FOR BIOINFORMATICS III (PERL)-Assignments for fall session - Question

BI 0036 – 01
PROGRAMMING FOR BIOINFORMATICS III (PERL)
(Book ID: B0923)
Marks 60

Guidelines:
learn the ques. provided beneath and ans the identical.
ans the subsequent 10 Marks
1. Write a note on BIOPERL and its modules.
2. What is BLAST? Write a program to parse BLAST output
3. What are regular expressions? How are these used in trend matching?
4. What are restriction enzymes? Write a program to search the restriction sites.
5. Write a perl program to obtain motifs.
6. Write a note on PDB file format? Write a program to parse the PDB files.






















BI 0036 – 02
PROGRAMMING FOR BIOINFORMATICS III (PERL)
(Book ID: B0923)
Marks 60

Guidelines:
learn the ques. provided beneath and ans the identical.
1. ans the following 10 Marks
a) What is FASTA format? Write a program to parse FASTA file.
b) What are subroutines? Write a note on advantages of subroutines.
c) Write an account on benefits of PERL.
d) Write a note on file handing using PERL
2. Write short note on the subsequent 5 marks every
a) Scalar variables
b) Arrays
c) Algorithms
d) Pseudocode

Earning:   Approval pending.